NhsNumber

SUS Outpatient Death

• Value copied from nhs_number

• nhs_number Patient NHS Number NHS NUMBER

	select
		NHSNumber as nhs_number,
		coalesce(max(ReferralToTreatmentPeriodEndDate), max(CDSActivityDate)) as death_date
	from [omop_staging].[sus_OP]
	where ReferralToTreatmentPeriodStatus = 36
		and (CDSActivityDate is not null or ReferralToTreatmentPeriodEndDate is not null)
		and NHSNumber is not null
	group by NHSNumber
	

Comment or raise an issue for this mapping.

SUS Inpatient Death

• Value copied from nhs_number

• nhs_number Patient NHS Number NHS NUMBER

;with primarydiagnosis as (
	select *
	from omop_staging.sus_ICDDiagnosis
	where IsPrimaryDiagnosis = 1
)

select
	apc.NHSNumber as nhs_number,
	max(apc.DischargeDateFromHospitalProviderSpell) as death_date,
	max(apc.DischargeTimeHospitalProviderSpell) as death_time,
	max(d.DiagnosisICD) as DiagnosisICD
from omop_staging.sus_APC apc
	left join primarydiagnosis d
		on apc.MessageId = d.MessageId
where
	apc.NHSNumber is not null and
	apc.DischargeDateFromHospitalProviderSpell is not null and
	apc.DischargeMethodHospitalProviderSpell = '4' -- "Patient died"

group by apc.NHSNumber
	

Comment or raise an issue for this mapping.

SUS A&E Death

• Value copied from nhs_number

• nhs_number Patient NHS Number NHS NUMBER

select
	NHSNumber as nhs_number,
	coalesce(max(ReferralToTreatmentPeriodEndDate), max(CDSActivityDate)) as death_date
from [omop_staging].[sus_AE]
where ((ReferralToTreatmentPeriodStatus = 36) --PATIENT died before treatment
	or (AEPatientGroup = 70) -- PATIENT brought in dead
	or (AEAttendanceDisposal = 10))  --PATIENT died in AE
	and (CDSActivityDate is not null or ReferralToTreatmentPeriodEndDate is not null)
	and NHSNumber is not null
group by NHSNumber
	

Comment or raise an issue for this mapping.

COSD v9 DeathDischargeDestination

• Value copied from NhsNumber

• NhsNumber Patient NHS Number NHS NUMBER

;with 
	XMLNAMESPACES('http://www.datadictionary.nhs.uk/messages/COSD-v9-0-1' AS COSD901),
	CosdRecords as ( 

	select
		T.staging.value('(Id/@root)[1]', 'uniqueidentifier') as Id,
		T.staging.query('.') as Node
	from omop_staging.cosd_staging
	cross apply content.nodes('COSD901:COSD/*') as T(staging)
	where T.staging.exist('Id/@root') = 1
		and Content.value('namespace-uri((/*:COSD)[1])','nvarchar(max)') = 'http://www.datadictionary.nhs.uk/messages/COSD-v9-0-1'
)
select
	distinct
		Node.value('(*/LinkagePatientId/NhsNumber/@extension)[1]', 'varchar(max)') as NhsNumber,
		coalesce
		(
			Node.value('(/*/Treatment/DischargeDateHospitalProviderSpell)[1]', 'varchar(max)'),
			datefromparts
			(
				year(convert(datetime, Node.value('(/*/Treatment/TreatmentStartDateCancer)[1]', 'varchar(max)'))),
				12,
				31
			)
		) as DeathDate
from CosdRecords
where Node.value('(/*/Treatment/DischargeDestinationHospitalProviderSpell/@code)[1]', 'varchar(max)') = 79 -- Not applicable - PATIENT died or stillbirth
	

Comment or raise an issue for this mapping.

COSD v9 BasisOfDiagnosisCancer

• Value copied from NhsNumber

• NhsNumber Patient NHS Number NHS NUMBER

;with 
	XMLNAMESPACES('http://www.datadictionary.nhs.uk/messages/COSD-v9-0-1' AS COSD901),
	CosdRecords as ( 

	select
		T.staging.value('(Id/@root)[1]', 'uniqueidentifier') as Id,
		T.staging.query('.') as Node
	from omop_staging.cosd_staging
	cross apply content.nodes('COSD901:COSD/*') as T(staging)
	where T.staging.exist('Id/@root') = 1
		and Content.value('namespace-uri((/*:COSD)[1])','nvarchar(max)') = 'http://www.datadictionary.nhs.uk/messages/COSD-v9-0-1'
), CosdDates as (
	select 
		convert(varchar(max), Node.value('(*/LinkagePatientId/NhsNumber/@extension)[1]', 'varchar(max)')) as NhsNumber,
		convert(datetime, Node.value('(/*/Treatment/TreatmentStartDateCancer)[1]', 'varchar(max)')) as TreatmentStartDateCancer,
		convert(datetime, Node.value('(/*/CancerCarePlan/MultidisciplinaryTeamDiscussionDateCancer)[1]', 'varchar(max)')) as MultidisciplinaryTeamDiscussionDateCancer,
		convert(datetime, Node.value('(/*/PrimaryPathway/Staging/StageDateFinalPretreatmentStage)[1]', 'varchar(max)')) as StageDateFinalPretreatmentStage,
		convert(datetime, Node.value('(/*/PrimaryPathway/LinkageDiagnosticDetails/DateOfPrimaryDiagnosisClinicallyAgreed)[1]', 'varchar(max)')) as DateOfPrimaryDiagnosisClinicallyAgreed
	from CosdRecords
	where Node.value('(//BasisOfDiagnosisCancer/@code)[1]', 'int') in (0, 1)
), Dates as (
	select
		NhsNumber,
		TreatmentStartDateCancer as [Date]
	from CosdDates

	union 

	select
		NhsNumber,
		MultidisciplinaryTeamDiscussionDateCancer as [Date]
	from CosdDates

	union 

	select
		NhsNumber,
		StageDateFinalPretreatmentStage as [Date]
	from CosdDates

	union 

	select
		NhsNumber,
		DateOfPrimaryDiagnosisClinicallyAgreed as [Date]
	from CosdDates
)
select
	NhsNumber,
	datefromparts(year(max ([Date])), 12, 31) as DeathDate
from Dates
group by NhsNumber
	

Comment or raise an issue for this mapping.

COSD v8 Death

• Value copied from NhsNumber

• NhsNumber Patient NHS Number NHS NUMBER

;with XMLNAMESPACES('http://www.datadictionary.nhs.uk/messages/COSD-v8-1' AS COSD),
	CosdRecords as ( 
	select
		T.staging.value('(Id/@root)[1]', 'uniqueidentifier') as Id,
		T.staging.query('*[local-name() != "Id"][1]/*[1]') as Node -- Select the first inner element of the element that is not called Id.
	from omop_staging.cosd_staging
	cross apply content.nodes('COSD:COSD/*') as T(staging)
	where T.staging.exist('Id/@root') = 1
		and Content.value('namespace-uri((/*:COSD)[1])','nvarchar(max)') = 'http://www.datadictionary.nhs.uk/messages/COSD-v8-1'
		--and substring (FileName, 15, 2) = 'CO'
)
select 
	distinct
		Node.value('(//NHSNumber/@extension)[1]', 'varchar(max)') as NhsNumber,
		Node.value('(//PersonDeathDate)[1]', 'varchar(max)') as DeathDate
from CosdRecords
where Node.value('(//PersonDeathDate)[1]', 'varchar(max)') is not null;
	

Comment or raise an issue for this mapping.

CDS Death

• Value copied from nhs_number

• nhs_number Patient NHS Number NHS NUMBER

select
	distinct	
		l1.NHSNumber as nhs_number,
		l5.DischargeDateHospitalProviderSpell as death_date
from omop_staging.cds_line01 l1
	inner join omop_staging.cds_line05 l5
		on l1.MessageId = l5.MessageId
where l1.NHSNumber is not null
	and 
	(
		l5.DischargeMethod = '4' -- "Patient died"
		or 
		(
			l5.DischargeDestinationCode = '79' and -- Not applicable - PATIENT died or stillbirth
			l5.DischargeMethod != '5' -- not stillbirth
		)
	);
	

Comment or raise an issue for this mapping.