qualifier_concept_id

CosdV9LungSurgicalAccessType

Source column SurgicalAccessType. Lookup SurgicalAccessType concepts for lung cancer procedures.

SurgicalAccessType	qualifier_concept_id	notes
1	4044378	Open approach
2	4044378	Laparoscopic/Thoracoscopic with planned conversion to open surgery
3	4044378	Laparoscopic/Thoracoscopic with unplanned conversion to open surgery
4	44808608	Laparoscopic/Thoracoscopic completed
5	44790026	Robotic surgery

Notes

• OMOP Open approach
• OMOP Laparoscopic/Thoracoscopic
• OMOP Robotic surgery

• SURGICAL ACCESS TYPE

• SurgicalAccessType A code representing the surgical access type used during a procedure. SURGICAL ACCESS TYPE

with LU as (
    select
        Record ->> '$.PrimaryPathway.ReferralAndFirstStageOfPatientPathway.DateFirstSeen' as DateFirstSeen,
        Record ->> '$.PrimaryPathway.ReferralAndFirstStageOfPatientPathway.DateFirstSeenCancerSpecialist' as DateFirstSeenCancerSpecialist,
        Record ->> '$.PrimaryPathway.LinkageDiagnosticDetails.DateOfPrimaryDiagnosisClinicallyAgreed' as DateOfPrimaryDiagnosisClinicallyAgreed,
        Record ->> '$.PrimaryPathway.Staging.StageDateFinalPretreatmentStage' as StageDateFinalPretreatmentStage,
        Record ->> '$.PrimaryPathway.Staging.StageDateIntegratedStage' as StageDateIntegratedStage,
        Record ->> '$.Treatment.TreatmentStartDateCancer' as TreatmentStartDateCancer,
        Record ->> '$.Treatment.Surgery.ProcedureDate' as ProcedureDate,
        Record ->> '$.Treatment.Surgery.SurgicalAccessType.@code' as SurgicalAccessType,
        Record ->> '$.LinkagePatientId.NhsNumber.@extension' as NhsNumber
    from omop_staging.cosd_staging_901
    where type = 'LU'
)
select
    distinct
        SurgicalAccessType,
        NhsNumber,
        least(
            cast(DateFirstSeen as date),
            cast(DateFirstSeenCancerSpecialist as date),
            cast(DateOfPrimaryDiagnosisClinicallyAgreed as date),
            cast(StageDateFinalPretreatmentStage as date),
            cast(StageDateIntegratedStage as date),
            cast(TreatmentStartDateCancer as date),
            cast(ProcedureDate as date)
        ) as Date
from LU o
where o.SurgicalAccessType is not null
  and not (
        DateFirstSeen is null and
        DateFirstSeenCancerSpecialist is null and
        DateOfPrimaryDiagnosisClinicallyAgreed is null and
        StageDateFinalPretreatmentStage is null and
        StageDateIntegratedStage is null and
        TreatmentStartDateCancer is null and
        ProcedureDate is null
    )

Comment or raise an issue for this mapping.

CosdV8LungSurgicalAccessType

Source column SurgicalAccessType. Lookup SurgicalAccessType concepts for lung cancer procedures.

SurgicalAccessType	qualifier_concept_id	notes
1	4044378	Open approach
2	4044378	Laparoscopic/Thoracoscopic with planned conversion to open surgery
3	4044378	Laparoscopic/Thoracoscopic with unplanned conversion to open surgery
4	44808608	Laparoscopic/Thoracoscopic completed
5	44790026	Robotic surgery

Notes

• OMOP Open approach
• OMOP Laparoscopic/Thoracoscopic
• OMOP Robotic surgery

• SURGICAL ACCESS TYPE

• SurgicalAccessType A code representing the surgical access type used during a procedure. SURGICAL ACCESS TYPE

with LU as (
    select 
        Record ->> '$.Lung.LungCore.LungCoreReferralAndFirstStageOfPatientPathway.DateFirstSeen' as DateFirstSeen,
        Record ->> '$.Lung.LungCore.LungCoreReferralAndFirstStageOfPatientPathway.SpecialistDateFirstSeen' as SpecialistDateFirstSeen,
        Record ->> '$.Lung.LungCore.LungCoreLinkageDiagnosticDetails.ClinicalDateCancerDiagnosis' as ClinicalDateCancerDiagnosis,
        Record ->> '$.Lung.LungCore.LungCoreStaging.IntegratedStageTNMStageGroupingDate' as IntegratedStageTNMStageGroupingDate,
        Record ->> '$.Lung.LungCore.LungCoreStaging.FinalPreTreatmentTNMStageGroupingDate' as FinalPreTreatmentTNMStageGroupingDate,
        unnest ([[Record ->> '$.Lung.LungCore.LungCoreTreatment.CancerTreatmentStartDate'], Record ->> '$.Lung.LungCore.LungCoreTreatment[*].CancerTreatmentStartDate'], recursive := true) as CancerTreatmentStartDate,
        Record ->> '$.Lung.LungCore.LungCoreTreatment.LungCoreSurgeryAndOtherProcedures.ProcedureDate' as ProcedureDate,
        Record ->> '$.Lung.LungCore.LungCoreTreatment.LungCoreSurgeryAndOtherProcedures.SurgicalAccessType.@code' as SurgicalAccessType,
        Record ->> '$.Lung.LungCore.LungCoreLinkagePatientId.NHSNumber.@extension' as NhsNumber
    from omop_staging.cosd_staging_81
    where Type = 'LU'
)
select
      distinct
          SurgicalAccessType,
          NhsNumber,
          least(
                cast (DateFirstSeen as date),
                cast (SpecialistDateFirstSeen as date),
                cast (ClinicalDateCancerDiagnosis as date),
                cast (IntegratedStageTNMStageGroupingDate as date),
                cast (FinalPreTreatmentTNMStageGroupingDate as date),
                cast (CancerTreatmentStartDate as date),
                cast (ProcedureDate as date)
              ) as Date
from LU o
where o.SurgicalAccessType is not null
  and not (
    DateFirstSeen is null and
    SpecialistDateFirstSeen is null and
    ClinicalDateCancerDiagnosis is null and
    IntegratedStageTNMStageGroupingDate is null and
    FinalPreTreatmentTNMStageGroupingDate is null and
    CancerTreatmentStartDate is null and
    ProcedureDate is null
    )

Comment or raise an issue for this mapping.