value_as_number

SUS Inpatient Total Previous Pregnancies Observation

Source column TotalPreviousPregnancies. Converts text to integers.

TotalPreviousPregnancies PREGNANCY TOTAL PREVIOUS PREGNANCIES is the number of previous pregnancies resulting in one or more REGISTRABLE BIRTHS. PREGNANCY TOTAL PREVIOUS PREGNANCIES

select 
	apc.NHSNumber, 
	apc.GeneratedRecordIdentifier,
	apc.HospitalProviderSpellNumber,
	max(apc.CDSActivityDate) as observation_date,
	apc.PregnancyTotalPreviousPregnancies
from [omop_staging].[sus_APC] apc
where apc.NHSNumber is not null
	and apc.PregnancyTotalPreviousPregnancies is not null
	and apc.CDSActivityDate is not null
	and apc.CdsType in ('140', '120')
group by 
	apc.NHSNumber, 
	apc.GeneratedRecordIdentifier, 
    apc.HospitalProviderSpellNumber,
	apc.PregnancyTotalPreviousPregnancies;
	

Comment or raise an issue for this mapping.

SUS Inpatient NumberofBabies Observation

Source column NumberofBabies. Converts text to integers.

NumberofBabies The number of REGISTRABLE BIRTHS (live or still born at a particular delivery). NUMBER OF BABIES INDICATION CODE

select
	apc.NHSNumber,
	apc.GeneratedRecordIdentifier,
	apc.HospitalProviderSpellNumber,
	coalesce(max(apc.DeliveryDate), max(apc.CDSActivityDate)) as observation_date,
	apc.NumberofBabies
from [omop_staging].[sus_APC] apc													
where apc.NHSNumber is not null
	and apc.NumberofBabies is not null
	and apc.CDSType in ('120','140')
group by
	apc.NHSNumber,
	apc.GeneratedRecordIdentifier, 
    apc.HospitalProviderSpellNumber,
	apc.DeliveryDate,
	apc.NumberofBabies;
	

Comment or raise an issue for this mapping.

SUS Inpatient Gestation Length Labour Onset Observation

Source column GestationLengthLabourOnset. Converts text to integers.

GestationLengthLabourOnset GESTATION LENGTH (LABOUR ONSET) records a period of between 10 to 49 weeks in completed weeks at the onset of Labour. GESTATION LENGTH (LABOUR ONSET)

select 
	apc.NHSNumber, 
	apc.GeneratedRecordIdentifier,
	apc.HospitalProviderSpellNumber,
	coalesce(max(apc.DeliveryDate), max(apc.CDSActivityDate)) as observation_date, 
	apc.GestationLengthLabourOnset
from [omop_staging].[sus_APC] as apc																			
where apc.NHSNumber is not null
  and len(apc.NHSNumber) = 10
  and apc.GestationLengthLabourOnset is not null
  and apc.CDSType in ('120', '140')
group by 
	apc.NHSNumber, 
	apc.GeneratedRecordIdentifier, 
    apc.HospitalProviderSpellNumber,
	apc.DeliveryDate, 
	apc.GestationLengthLabourOnset;
	

Comment or raise an issue for this mapping.

CosdV9TobaccoSmokingStatus

Source column TobaccoSmokingStatus. Converts text to integers.

TobaccoSmokingStatus SMOKING STATUS (CANCER) is for use in the Cancer Outcomes and Services Data Set: Core to identify if the PATIENT smokes tobacco only. SMOKING STATUS (CANCER)

;with 
	XMLNAMESPACES('http://www.datadictionary.nhs.uk/messages/COSD-v9-0-1' AS COSD901),
	CosdRecords as ( 

	select
		T.staging.value('(Id/@root)[1]', 'uniqueidentifier') as Id,
		T.staging.query('.') as Node
	from omop_staging.cosd_staging
	cross apply content.nodes('COSD901:COSD/*') as T(staging)
	where T.staging.exist('Id/@root') = 1
		and Content.value('namespace-uri((/*:COSD)[1])','nvarchar(max)') = 'http://www.datadictionary.nhs.uk/messages/COSD-v9-0-1'
		and substring (FileName, 15, 2) = 'CO'
), CO as (
	select
		Id,
		Node.value('(ColorectalRecord/PrimaryPathway/ReferralAndFirstStageOfPatientPathway/DateFirstSeen)[1]', 'varchar(max)') as DateFirstSeen,
		Node.value('(ColorectalRecord/PrimaryPathway/ReferralAndFirstStageOfPatientPathway/DateFirstSeenCancerSpecialist)[1]', 'varchar(max)') as DateFirstSeenCancerSpecialist,
		Node.value('(ColorectalRecord/PrimaryPathway/LinkageDiagnosticDetails/DateOfPrimaryDiagnosisClinicallyAgreed)[1]', 'varchar(max)') as DateOfPrimaryDiagnosisClinicallyAgreed,
		Node.value('(ColorectalRecord/PrimaryPathway/Staging/StageDateFinalPretreatmentStage)[1]', 'varchar(max)') as StageDateFinalPretreatmentStage,
		Node.value('(ColorectalRecord/PrimaryPathway/Staging/StageDateIntegratedStage)[1]', 'varchar(max)') as StageDateIntegratedStage,
		Node.value('(ColorectalRecord/Treatment/TreatmentStartDateCancer)[1]', 'varchar(max)') as TreatmentStartDateCancer,
		Node.value('(ColorectalRecord/Treatment/Surgery/ProcedureDate)[1]', 'varchar(max)') as ProcedureDate,
		Node.value('(ColorectalRecord/ClinicalNurseSpecialistAndRiskFactorAssessments/TobaccoSmokingStatus/@code)[1]', 'varchar(max)') as TobaccoSmokingStatus,
		Node.value('(ColorectalRecord/LinkagePatientId/NhsNumber/@extension)[1]', 'varchar(max)') as NhsNumber
  from CosdRecords
)
select
      distinct
          TobaccoSmokingStatus,
          NhsNumber,
          (
              select
                  min (i) as [Date]
              from
              (
                values
                (DateFirstSeen),
                (DateFirstSeenCancerSpecialist),
                (DateOfPrimaryDiagnosisClinicallyAgreed),
                (StageDateFinalPretreatmentStage),
                (StageDateIntegratedStage),
                (TreatmentStartDateCancer),
                (ProcedureDate)
              ) as T(i)
          ) as [Date]
from CO o
where o.TobaccoSmokingStatus is not null
  and not (
		DateFirstSeen is null and
		DateFirstSeenCancerSpecialist is null and
		DateOfPrimaryDiagnosisClinicallyAgreed is null and
		StageDateFinalPretreatmentStage is null and
		StageDateIntegratedStage is null and
		TreatmentStartDateCancer is null and
		ProcedureDate is null
)

Comment or raise an issue for this mapping.

CosdV9TobaccoSmokingCessation

Source column TobaccoSmokingCessation. Converts text to integers.

TobaccoSmokingCessation An indication of whether treatment was given to the PATIENT for tobacco smoking cessation. TOBACCO SMOKING CESSATION TREATMENT INDICATION CODE

;with 
	XMLNAMESPACES('http://www.datadictionary.nhs.uk/messages/COSD-v9-0-1' AS COSD901),
	CosdRecords as ( 

	select
		T.staging.value('(Id/@root)[1]', 'uniqueidentifier') as Id,
		T.staging.query('.') as Node
	from omop_staging.cosd_staging
	cross apply content.nodes('COSD901:COSD/*') as T(staging)
	where T.staging.exist('Id/@root') = 1
		and Content.value('namespace-uri((/*:COSD)[1])','nvarchar(max)') = 'http://www.datadictionary.nhs.uk/messages/COSD-v9-0-1'
		and substring (FileName, 15, 2) = 'CO'
), CO as (
	select
		Id,
		Node.value('(ColorectalRecord/PrimaryPathway/ReferralAndFirstStageOfPatientPathway/DateFirstSeen)[1]', 'varchar(max)') as DateFirstSeen,
		Node.value('(ColorectalRecord/PrimaryPathway/ReferralAndFirstStageOfPatientPathway/DateFirstSeenCancerSpecialist)[1]', 'varchar(max)') as DateFirstSeenCancerSpecialist,
		Node.value('(ColorectalRecord/PrimaryPathway/LinkageDiagnosticDetails/DateOfPrimaryDiagnosisClinicallyAgreed)[1]', 'varchar(max)') as DateOfPrimaryDiagnosisClinicallyAgreed,
		Node.value('(ColorectalRecord/PrimaryPathway/Staging/StageDateFinalPretreatmentStage)[1]', 'varchar(max)') as StageDateFinalPretreatmentStage,
		Node.value('(ColorectalRecord/PrimaryPathway/Staging/StageDateIntegratedStage)[1]', 'varchar(max)') as StageDateIntegratedStage,
		Node.value('(ColorectalRecord/Treatment/TreatmentStartDateCancer)[1]', 'varchar(max)') as TreatmentStartDateCancer,
		Node.value('(ColorectalRecord/Treatment/Surgery/ProcedureDate)[1]', 'varchar(max)') as ProcedureDate,
		Node.value('(ColorectalRecord/ClinicalNurseSpecialistAndRiskFactorAssessments/TobaccoSmokingCessation/@code)[1]', 'varchar(max)') as TobaccoSmokingCessation,
		Node.value('(ColorectalRecord/LinkagePatientId/NhsNumber/@extension)[1]', 'varchar(max)') as NhsNumber
  from CosdRecords
)
select
      distinct
          TobaccoSmokingCessation,
          NhsNumber,
          (
              select
                  min (i) as [Date]
              from
              (
                values
                (DateFirstSeen),
                (DateFirstSeenCancerSpecialist),
                (DateOfPrimaryDiagnosisClinicallyAgreed),
                (StageDateFinalPretreatmentStage),
                (StageDateIntegratedStage),
                (TreatmentStartDateCancer),
                (ProcedureDate)
              ) as T(i)
          ) as [Date]
from CO o
where o.TobaccoSmokingCessation is not null
  and not (
		DateFirstSeen is null and
		DateFirstSeenCancerSpecialist is null and
		DateOfPrimaryDiagnosisClinicallyAgreed is null and
		StageDateFinalPretreatmentStage is null and
		StageDateIntegratedStage is null and
		TreatmentStartDateCancer is null and
		ProcedureDate is null
)

Comment or raise an issue for this mapping.

CosdV9PerformanceStatusAdult

Source column PerformanceStatusAdult. Converts text to integers.

PerformanceStatusAdult A World Health Organisation classification indicating a PERSON’s status relating to activity/DISABILITY. PERFORMANCE STATUS (ADULT)

;with 
	XMLNAMESPACES('http://www.datadictionary.nhs.uk/messages/COSD-v9-0-1' AS COSD901),
	CosdRecords as ( 

	select
		T.staging.value('(Id/@root)[1]', 'uniqueidentifier') as Id,
		T.staging.query('.') as Node
	from omop_staging.cosd_staging
	cross apply content.nodes('COSD901:COSD/*') as T(staging)
	where T.staging.exist('Id/@root') = 1
		and Content.value('namespace-uri((/*:COSD)[1])','nvarchar(max)') = 'http://www.datadictionary.nhs.uk/messages/COSD-v9-0-1'
		and substring (FileName, 15, 2) = 'CO'
), CO as (
	select
		Id,
		Node.value('(ColorectalRecord/PrimaryPathway/ReferralAndFirstStageOfPatientPathway/DateFirstSeen)[1]', 'varchar(max)') as DateFirstSeen,
		Node.value('(ColorectalRecord/PrimaryPathway/ReferralAndFirstStageOfPatientPathway/DateFirstSeenCancerSpecialist)[1]', 'varchar(max)') as DateFirstSeenCancerSpecialist,
		Node.value('(ColorectalRecord/PrimaryPathway/LinkageDiagnosticDetails/DateOfPrimaryDiagnosisClinicallyAgreed)[1]', 'varchar(max)') as DateOfPrimaryDiagnosisClinicallyAgreed,
		Node.value('(ColorectalRecord/PrimaryPathway/Staging/StageDateFinalPretreatmentStage)[1]', 'varchar(max)') as StageDateFinalPretreatmentStage,
		Node.value('(ColorectalRecord/PrimaryPathway/Staging/StageDateIntegratedStage)[1]', 'varchar(max)') as StageDateIntegratedStage,
		Node.value('(ColorectalRecord/Treatment/TreatmentStartDateCancer)[1]', 'varchar(max)') as TreatmentStartDateCancer,
		Node.value('(ColorectalRecord/Treatment/Surgery/ProcedureDate)[1]', 'varchar(max)') as ProcedureDate,
		Node.value('(ColorectalRecord/PrimaryPathway/Diagnosis/PerformanceStatusAdult/@code)[1]', 'varchar(max)') as PerformanceStatusAdult,
		Node.value('(ColorectalRecord/LinkagePatientId/NhsNumber/@extension)[1]', 'varchar(max)') as NhsNumber
  from CosdRecords
)
select
      distinct
          PerformanceStatusAdult,
          NhsNumber,
          (
              select
                  min (i) as [Date]
              from
              (
                values
                (DateFirstSeen),
                (DateFirstSeenCancerSpecialist),
                (DateOfPrimaryDiagnosisClinicallyAgreed),
                (StageDateFinalPretreatmentStage),
                (StageDateIntegratedStage),
                (TreatmentStartDateCancer),
                (ProcedureDate)
              ) as T(i)
          ) as [Date]
from CO o
where o.PerformanceStatusAdult is not null
  and not (
		DateFirstSeen is null and
		DateFirstSeenCancerSpecialist is null and
		DateOfPrimaryDiagnosisClinicallyAgreed is null and
		StageDateFinalPretreatmentStage is null and
		StageDateIntegratedStage is null and
		TreatmentStartDateCancer is null and
		ProcedureDate is null
)

Comment or raise an issue for this mapping.

CosdV9MenopausalStatus

Source column MenopausalStatus. Converts text to integers.

MenopausalStatus MENOPAUSAL STATUS (AT DIAGNOSIS) is the MENOPAUSAL STATUS of a PATIENT at PATIENT DIAGNOSIS. MENOPAUSAL STATUS (AT DIAGNOSIS)

;with 
	XMLNAMESPACES('http://www.datadictionary.nhs.uk/messages/COSD-v9-0-1' AS COSD901),
	CosdRecords as ( 

	select
		T.staging.value('(Id/@root)[1]', 'uniqueidentifier') as Id,
		T.staging.query('.') as Node
	from omop_staging.cosd_staging
	cross apply content.nodes('COSD901:COSD/*') as T(staging)
	where T.staging.exist('Id/@root') = 1
		and Content.value('namespace-uri((/*:COSD)[1])','nvarchar(max)') = 'http://www.datadictionary.nhs.uk/messages/COSD-v9-0-1'
		and substring (FileName, 15, 2) = 'CO'
), CO as (
	select
		Id,
		Node.value('(ColorectalRecord/PrimaryPathway/LinkageDiagnosticDetails/DateOfPrimaryDiagnosisClinicallyAgreed)[1]', 'varchar(max)') as DateOfPrimaryDiagnosisClinicallyAgreed,
		Node.value('(ColorectalRecord/Treatment/TreatmentStartDateCancer)[1]', 'varchar(max)') as TreatmentStartDateCancer,
		Node.value('(ColorectalRecord/Treatment/Surgery/ProcedureDate)[1]', 'varchar(max)') as ProcedureDate,
		Node.value('(ColorectalRecord/ClinicalNurseSpecialistAndRiskFactorAssessments/MenopausalStatus/@code)[1]', 'varchar(max)') as MenopausalStatus,
		Node.value('(ColorectalRecord/LinkagePatientId/NhsNumber/@extension)[1]', 'varchar(max)') as NhsNumber
  from CosdRecords
)
select
      distinct
          MenopausalStatus,
          NhsNumber,
          (
              select
                  min (i) as [Date]
              from
              (
                values
                (DateOfPrimaryDiagnosisClinicallyAgreed),
                (TreatmentStartDateCancer),
                (ProcedureDate)
              ) as T(i)
          ) as [Date]
from CO o
where o.MenopausalStatus is not null
  and not (
		DateOfPrimaryDiagnosisClinicallyAgreed is null and
		TreatmentStartDateCancer is null and
		ProcedureDate is null
)

Comment or raise an issue for this mapping.

CosdV9AsaScore

Source column AsaScore. Converts text to integers.

AsaScore The physical status of the PATIENT as recorded by an anaesthetist for the operative procedure. ASA PHYSICAL STATUS CLASSIFICATION SYSTEM CODE

;with 
	XMLNAMESPACES('http://www.datadictionary.nhs.uk/messages/COSD-v9-0-1' AS COSD901),
	CosdRecords as ( 

	select
		T.staging.value('(Id/@root)[1]', 'uniqueidentifier') as Id,
		T.staging.query('.') as Node
	from omop_staging.cosd_staging
	cross apply content.nodes('COSD901:COSD/*') as T(staging)
	where T.staging.exist('Id/@root') = 1
		and Content.value('namespace-uri((/*:COSD)[1])','nvarchar(max)') = 'http://www.datadictionary.nhs.uk/messages/COSD-v9-0-1'
		and substring (FileName, 15, 2) = 'CO'
), CO as (
	select
		Id,
		Node.value('(ColorectalRecord/PrimaryPathway/ReferralAndFirstStageOfPatientPathway/DateFirstSeen)[1]', 'varchar(max)') as DateFirstSeen,
		Node.value('(ColorectalRecord/PrimaryPathway/ReferralAndFirstStageOfPatientPathway/DateFirstSeenCancerSpecialist)[1]', 'varchar(max)') as DateFirstSeenCancerSpecialist,
		Node.value('(ColorectalRecord/PrimaryPathway/LinkageDiagnosticDetails/DateOfPrimaryDiagnosisClinicallyAgreed)[1]', 'varchar(max)') as DateOfPrimaryDiagnosisClinicallyAgreed,
		Node.value('(ColorectalRecord/PrimaryPathway/Staging/StageDateFinalPretreatmentStage)[1]', 'varchar(max)') as StageDateFinalPretreatmentStage,
		Node.value('(ColorectalRecord/PrimaryPathway/Staging/StageDateIntegratedStage)[1]', 'varchar(max)') as StageDateIntegratedStage,
		Node.value('(ColorectalRecord/Treatment/TreatmentStartDateCancer)[1]', 'varchar(max)') as TreatmentStartDateCancer,
		Node.value('(ColorectalRecord/Treatment/Surgery/ProcedureDate)[1]', 'varchar(max)') as ProcedureDate,
		Node.value('(ColorectalRecord/Treatment/Surgery/AsaScore/@code)[1]', 'varchar(max)') as AsaScore,
		Node.value('(ColorectalRecord/LinkagePatientId/NhsNumber/@extension)[1]', 'varchar(max)') as NhsNumber
  from CosdRecords
)
select
      distinct
          AsaScore,
          NhsNumber,
          (
              select
                  min (i) as [Date]
              from
              (
                values
                (DateFirstSeen),
                (DateFirstSeenCancerSpecialist),
                (DateOfPrimaryDiagnosisClinicallyAgreed),
                (StageDateFinalPretreatmentStage),
                (StageDateIntegratedStage),
                (TreatmentStartDateCancer),
                (ProcedureDate)
              ) as T(i)
          ) as [Date]
from CO o
where o.AsaScore is not null
  and not (
		DateFirstSeen is null and
		DateFirstSeenCancerSpecialist is null and
		DateOfPrimaryDiagnosisClinicallyAgreed is null and
		StageDateFinalPretreatmentStage is null and
		StageDateIntegratedStage is null and
		TreatmentStartDateCancer is null and
		ProcedureDate is null
)

Comment or raise an issue for this mapping.

CosdV9AdultComorbidityEvaluation

Source column AdultComorbidityEvaluation. Converts text to integers.

AdultComorbidityEvaluation The PERSON SCORE recorded during a Cancer Care Spell, where the ASSESSMENT TOOL is ‘Adult Comorbidity Evaluation - 27’. ADULT COMORBIDITY EVALUATION - 27 SCORE

;with 
	XMLNAMESPACES('http://www.datadictionary.nhs.uk/messages/COSD-v9-0-1' AS COSD901),
	CosdRecords as ( 

	select
		T.staging.value('(Id/@root)[1]', 'uniqueidentifier') as Id,
		T.staging.query('.') as Node
	from omop_staging.cosd_staging
	cross apply content.nodes('COSD901:COSD/*') as T(staging)
	where T.staging.exist('Id/@root') = 1
		and Content.value('namespace-uri((/*:COSD)[1])','nvarchar(max)') = 'http://www.datadictionary.nhs.uk/messages/COSD-v9-0-1'
		and substring (FileName, 15, 2) = 'CO'
), CO as (
	select
		Id,
		Node.value('(ColorectalRecord/PrimaryPathway/ReferralAndFirstStageOfPatientPathway/DateFirstSeen)[1]', 'varchar(max)') as DateFirstSeen,
		Node.value('(ColorectalRecord/PrimaryPathway/ReferralAndFirstStageOfPatientPathway/DateFirstSeenCancerSpecialist)[1]', 'varchar(max)') as DateFirstSeenCancerSpecialist,
		Node.value('(ColorectalRecord/PrimaryPathway/LinkageDiagnosticDetails/DateOfPrimaryDiagnosisClinicallyAgreed)[1]', 'varchar(max)') as DateOfPrimaryDiagnosisClinicallyAgreed,
		Node.value('(ColorectalRecord/PrimaryPathway/Staging/StageDateFinalPretreatmentStage)[1]', 'varchar(max)') as StageDateFinalPretreatmentStage,
		Node.value('(ColorectalRecord/PrimaryPathway/Staging/StageDateIntegratedStage)[1]', 'varchar(max)') as StageDateIntegratedStage,
		Node.value('(ColorectalRecord/Treatment/TreatmentStartDateCancer)[1]', 'varchar(max)') as TreatmentStartDateCancer,
		Node.value('(ColorectalRecord/Treatment/Surgery/ProcedureDate)[1]', 'varchar(max)') as ProcedureDate,
		Node.value('(ColorectalRecord/CancerCarePlan/AdultComorbidityEvaluation-27Score/@code)[1]', 'varchar(max)') as AdultComorbidityEvaluation,
		Node.value('(ColorectalRecord/LinkagePatientId/NhsNumber/@extension)[1]', 'varchar(max)') as NhsNumber
  from CosdRecords
)
select
      distinct
          AdultComorbidityEvaluation,
          NhsNumber,
          (
              select
                  min (i) as [Date]
              from
              (
                values
                (DateFirstSeen),
                (DateFirstSeenCancerSpecialist),
                (DateOfPrimaryDiagnosisClinicallyAgreed),
                (StageDateFinalPretreatmentStage),
                (StageDateIntegratedStage),
                (TreatmentStartDateCancer),
                (ProcedureDate)
              ) as T(i)
          ) as [Date]
from CO o
where o.AdultComorbidityEvaluation is not null
  and not (
		DateFirstSeen is null and
		DateFirstSeenCancerSpecialist is null and
		DateOfPrimaryDiagnosisClinicallyAgreed is null and
		StageDateFinalPretreatmentStage is null and
		StageDateIntegratedStage is null and
		TreatmentStartDateCancer is null and
		ProcedureDate is null
)

Comment or raise an issue for this mapping.

CosdV8SmokingStatusCode

Source column SmokingStatusCode. Converts text to integers.

SmokingStatusCode SMOKING STATUS (CANCER) is for use in the Cancer Outcomes and Services Data Set: Core to identify if the PATIENT smokes tobacco only. SMOKING STATUS (CANCER)

;with 
	XMLNAMESPACES('http://www.datadictionary.nhs.uk/messages/COSD-v8-1' AS COSD81),
	CosdRecords as ( 

	select
		T.staging.value('(Id/@root)[1]', 'uniqueidentifier') as Id,
		T.staging.query('.') as Node
	from omop_staging.cosd_staging
	cross apply content.nodes('COSD81:COSD/*') as T(staging)
	where T.staging.exist('Id/@root') = 1
		and Content.value('namespace-uri((/*:COSD)[1])','nvarchar(max)') = 'http://www.datadictionary.nhs.uk/messages/COSD-v8-1'
		and substring (FileName, 15, 2) = 'CO'
), CO as (
	select
		Id,
		Node.value('(COSDRecord/Colorectal/ColorectalCore/ColorectalCoreReferralAndFirstStageOfPatientPathway/DateFirstSeen)[1]', 'varchar(max)') as DateFirstSeen,
		Node.value('(COSDRecord/Colorectal/ColorectalCore/ColorectalCoreReferralAndFirstStageOfPatientPathway/SpecialistDateFirstSeen)[1]', 'varchar(max)') as SpecialistDateFirstSeen,
		Node.value('(COSDRecord/Colorectal/ColorectalCore/ColorectalCoreLinkageDiagnosticDetails/ClinicalDateCancerDiagnosis)[1]', 'varchar(max)') as ClinicalDateCancerDiagnosis,
		Node.value('(COSDRecord/Colorectal/ColorectalCore/ColorectalCoreStaging/IntegratedStageTNMStageGroupingDate)[1]', 'varchar(max)') as IntegratedStageTNMStageGroupingDate,
		Node.value('(COSDRecord/Colorectal/ColorectalCore/ColorectalCoreStaging/FinalPreTreatmentTNMStageGroupingDate)[1]', 'varchar(max)') as FinalPreTreatmentTNMStageGroupingDate,
		Node.value('(COSDRecord/Colorectal/ColorectalCore/ColorectalCoreTreatment/CancerTreatmentStartDate)[1]', 'varchar(max)') as CancerTreatmentStartDate,
		Node.value('(COSDRecord/Colorectal/ColorectalCore/ColorectalCoreTreatment/ColorectalCoreSurgeryAndOtherProcedures/ProcedureDate)[1]', 'varchar(max)') as ProcedureDate,
		Node.value('(COSDRecord/Colorectal/ColorectalCore/ColorectalCoreClinicalNurseSpecialistAndRiskFactorAssessments/SmokingStatusCode/@code)[1]', 'varchar(max)') as SmokingStatusCode,
		Node.value('(COSDRecord/Colorectal/ColorectalCore/ColorectalCoreLinkagePatientId/NHSNumber/@extension)[1]', 'varchar(max)') as NhsNumber
  from CosdRecords
)
select
      distinct
          SmokingStatusCode,
          NhsNumber,
          (
              select
                  min (i) as [Date]
              from
              (
                values
                (DateFirstSeen),
                (SpecialistDateFirstSeen),
                (ClinicalDateCancerDiagnosis),
                (IntegratedStageTNMStageGroupingDate),
                (FinalPreTreatmentTNMStageGroupingDate),
                (CancerTreatmentStartDate),
                (ProcedureDate)
              ) as T(i)
          ) as [Date]
from CO o
where o.SmokingStatusCode is not null
  and not (
		DateFirstSeen is null and
		SpecialistDateFirstSeen is null and
		ClinicalDateCancerDiagnosis is null and
		IntegratedStageTNMStageGroupingDate is null and
		FinalPreTreatmentTNMStageGroupingDate is null and
		CancerTreatmentStartDate is null and
		ProcedureDate is null
)

Comment or raise an issue for this mapping.

CosdV8AdultPerformanceStatus

Source column AdultPerformanceStatus. Converts text to integers.

AdultPerformanceStatus A World Health Organisation classification indicating a PERSON’s status relating to activity/DISABILITY. PERFORMANCE STATUS (ADULT)

;with 
	XMLNAMESPACES('http://www.datadictionary.nhs.uk/messages/COSD-v8-1' AS COSD81),
	CosdRecords as ( 

	select
		T.staging.value('(Id/@root)[1]', 'uniqueidentifier') as Id,
		T.staging.query('.') as Node
	from omop_staging.cosd_staging
	cross apply content.nodes('COSD81:COSD/*') as T(staging)
	where T.staging.exist('Id/@root') = 1
		and Content.value('namespace-uri((/*:COSD)[1])','nvarchar(max)') = 'http://www.datadictionary.nhs.uk/messages/COSD-v8-1'
		and substring (FileName, 15, 2) = 'CO'
), CO as (
	select
		Id,
		Node.value('(COSDRecord/Colorectal/ColorectalCore/ColorectalCoreReferralAndFirstStageOfPatientPathway/DateFirstSeen)[1]', 'varchar(max)') as DateFirstSeen,
		Node.value('(COSDRecord/Colorectal/ColorectalCore/ColorectalCoreReferralAndFirstStageOfPatientPathway/SpecialistDateFirstSeen)[1]', 'varchar(max)') as SpecialistDateFirstSeen,
		Node.value('(COSDRecord/Colorectal/ColorectalCore/ColorectalCoreLinkageDiagnosticDetails/ClinicalDateCancerDiagnosis)[1]', 'varchar(max)') as ClinicalDateCancerDiagnosis,
		Node.value('(COSDRecord/Colorectal/ColorectalCore/ColorectalCoreStaging/IntegratedStageTNMStageGroupingDate)[1]', 'varchar(max)') as IntegratedStageTNMStageGroupingDate,
		Node.value('(COSDRecord/Colorectal/ColorectalCore/ColorectalCoreStaging/FinalPreTreatmentTNMStageGroupingDate)[1]', 'varchar(max)') as FinalPreTreatmentTNMStageGroupingDate,
		Node.value('(COSDRecord/Colorectal/ColorectalCore/ColorectalCoreTreatment/CancerTreatmentStartDate)[1]', 'varchar(max)') as CancerTreatmentStartDate,
		Node.value('(COSDRecord/Colorectal/ColorectalCore/ColorectalCoreTreatment/ColorectalCoreSurgeryAndOtherProcedures/ProcedureDate)[1]', 'varchar(max)') as ProcedureDate,
		Node.value('(COSDRecord/Colorectal/ColorectalCore/ColorectalCoreDiagnosis/AdultPerformanceStatus/@code)[1]', 'varchar(max)') as AdultPerformanceStatus,
		Node.value('(COSDRecord/Colorectal/ColorectalCore/ColorectalCoreLinkagePatientId/NHSNumber/@extension)[1]', 'varchar(max)') as NhsNumber
  from CosdRecords
)
select
      distinct
          AdultPerformanceStatus,
          NhsNumber,
          (
              select
                  min (i) as [Date]
              from
              (
                values
                (DateFirstSeen),
                (SpecialistDateFirstSeen),
                (ClinicalDateCancerDiagnosis),
                (IntegratedStageTNMStageGroupingDate),
                (FinalPreTreatmentTNMStageGroupingDate),
                (CancerTreatmentStartDate),
                (ProcedureDate)
              ) as T(i)
          ) as [Date]
from CO o
where o.AdultPerformanceStatus is not null
  and not (
		DateFirstSeen is null and
		SpecialistDateFirstSeen is null and
		ClinicalDateCancerDiagnosis is null and
		IntegratedStageTNMStageGroupingDate is null and
		FinalPreTreatmentTNMStageGroupingDate is null and
		CancerTreatmentStartDate is null and
		ProcedureDate is null
)

Comment or raise an issue for this mapping.

CosdV8AdultComorbidityEvaluation

Source column AdultComorbidityEvaluation. Converts text to integers.

AdultComorbidityEvaluation The PERSON SCORE recorded during a Cancer Care Spell, where the ASSESSMENT TOOL is ‘Adult Comorbidity Evaluation - 27’. ADULT COMORBIDITY EVALUATION - 27 SCORE

;with 
	XMLNAMESPACES('http://www.datadictionary.nhs.uk/messages/COSD-v8-1' AS COSD81),
	CosdRecords as ( 

	select
		T.staging.value('(Id/@root)[1]', 'uniqueidentifier') as Id,
		T.staging.query('.') as Node
	from omop_staging.cosd_staging
	cross apply content.nodes('COSD81:COSD/*') as T(staging)
	where T.staging.exist('Id/@root') = 1
		and Content.value('namespace-uri((/*:COSD)[1])','nvarchar(max)') = 'http://www.datadictionary.nhs.uk/messages/COSD-v8-1'
		and substring (FileName, 15, 2) = 'CO'
), CO as (
	select
		Id,
		Node.value('(COSDRecord/Colorectal/ColorectalCore/ColorectalCoreReferralAndFirstStageOfPatientPathway/DateFirstSeen)[1]', 'varchar(max)') as DateFirstSeen,
		Node.value('(COSDRecord/Colorectal/ColorectalCore/ColorectalCoreReferralAndFirstStageOfPatientPathway/SpecialistDateFirstSeen)[1]', 'varchar(max)') as SpecialistDateFirstSeen,
		Node.value('(COSDRecord/Colorectal/ColorectalCore/ColorectalCoreLinkageDiagnosticDetails/ClinicalDateCancerDiagnosis)[1]', 'varchar(max)') as ClinicalDateCancerDiagnosis,
		Node.value('(COSDRecord/Colorectal/ColorectalCore/ColorectalCoreStaging/IntegratedStageTNMStageGroupingDate)[1]', 'varchar(max)') as IntegratedStageTNMStageGroupingDate,
		Node.value('(COSDRecord/Colorectal/ColorectalCore/ColorectalCoreStaging/FinalPreTreatmentTNMStageGroupingDate)[1]', 'varchar(max)') as FinalPreTreatmentTNMStageGroupingDate,
		Node.value('(COSDRecord/Colorectal/ColorectalCore/ColorectalCoreTreatment/CancerTreatmentStartDate)[1]', 'varchar(max)') as CancerTreatmentStartDate,
		Node.value('(COSDRecord/Colorectal/ColorectalCore/ColorectalCoreTreatment/ColorectalCoreSurgeryAndOtherProcedures/ProcedureDate)[1]', 'varchar(max)') as ProcedureDate,
		Node.value('(COSDRecord/Colorectal/ColorectalCore/ColorectalCoreCancerCarePlan/AdultComorbidityEvaluation/@code)[1]', 'varchar(max)') as AdultComorbidityEvaluation,
		Node.value('(COSDRecord/Colorectal/ColorectalCore/ColorectalCoreLinkagePatientId/NHSNumber/@extension)[1]', 'varchar(max)') as NhsNumber
  from CosdRecords
)
select
      distinct
          AdultComorbidityEvaluation,
          NhsNumber,
          (
              select
                  min (i) as [Date]
              from
              (
                values
                (DateFirstSeen),
                (SpecialistDateFirstSeen),
                (ClinicalDateCancerDiagnosis),
                (IntegratedStageTNMStageGroupingDate),
                (FinalPreTreatmentTNMStageGroupingDate),
                (CancerTreatmentStartDate),
                (ProcedureDate)
              ) as T(i)
          ) as [Date]
from CO o
where o.AdultComorbidityEvaluation is not null
  and not (
		DateFirstSeen is null and
		SpecialistDateFirstSeen is null and
		ClinicalDateCancerDiagnosis is null and
		IntegratedStageTNMStageGroupingDate is null and
		FinalPreTreatmentTNMStageGroupingDate is null and
		CancerTreatmentStartDate is null and
		ProcedureDate is null
)

Comment or raise an issue for this mapping.

Cds Total Previous Pregnancies Observation

Source column TotalPreviousPregnancies. Converts text to integers.

TotalPreviousPregnancies PREGNANCY TOTAL PREVIOUS PREGNANCIES is the number of previous pregnancies resulting in one or more REGISTRABLE BIRTHS. PREGNANCY TOTAL PREVIOUS PREGNANCIES

select 
	l1.NHSNumber, 
	l1.RecordConnectionIdentifier,
	l5.HospitalProviderSpellNumber,
	max(l1.CDSActivityDate) as CDSActivityDate, 
	l1.TotalPreviousPregnancies
from omop_staging.cds_line01 l1
	left outer join omop_staging.cds_line05 l5
		on l1.MessageId = l5.MessageId
where l1.TotalPreviousPregnancies is not null 
	and l1.NHSNumber is not null 
	and (l1.CdsRecordType = '140' or l1.CdsRecordType = '120')																			
group by 
	l1.NHSNumber, 
	l1.RecordConnectionIdentifier,
	l5.HospitalProviderSpellNumber,
	l1.CDSActivityDate, 
	l1.TotalPreviousPregnancies;		
	

Comment or raise an issue for this mapping.

Cds Person Weight Observation

Source column PersonWeight. Converts text to integers.

PersonWeight PERSON WEIGHT is the result of the Clinical Investigation which measures the PATIENT’s Weight, where the UNIT OF MEASUREMENT is ‘Kilograms (kg)’. PERSON WEIGHT

select 
	l1.NHSNumber, 
	l1.RecordConnectionIdentifier,
	l5.HospitalProviderSpellNumber,
	coalesce(max(l7.ActivityDateCriticalCare), MAX(l1.CDSActivityDate)) as observation_date, 
	l7.PersonWeight
from [omop_staging].[cds_line01] l1																			
	inner join [omop_staging].[cds_line07] l7													
		on l1.MessageId = l7.MessageId
	left outer join omop_staging.cds_line05 l5
		on l1.MessageId = l5.MessageId
where l7.PersonWeight is not null 
	and l1.NHSNumber is not null 				
group by 
	l1.NHSNumber, 
	l1.RecordConnectionIdentifier,
	l5.HospitalProviderSpellNumber,
	l7.ActivityDateCriticalCare, 
	l7.PersonWeight;		
	

Comment or raise an issue for this mapping.

Cds NumberofBabies Observation

Source column NumberofBabies. Converts text to integers.

NumberofBabies The number of REGISTRABLE BIRTHS (live or still born at a particular delivery). NUMBER OF BABIES INDICATION CODE

select 
	l1.NHSNumber, 
	l1.RecordConnectionIdentifier,
	l5.HospitalProviderSpellNumber,
	coalesce(max(l8.DeliveryDate), max(l1.CDSActivityDate)) as observation_date, 
	l8.NumberofBabies 																			
from omop_staging.cds_line01 l1																			
	inner join omop_staging.cds_line08 l8														
		on l1.MessageId = l8.MessageId
	left outer join omop_staging.cds_line05 l5
		on l1.MessageId = l5.MessageId
where 
	l8.NumberofBabies is not null 
	and l1.NHSNumber is not null  
	and (l1.CdsRecordType = '140' or l1.CdsRecordType = '120')																			
group by 
	l1.NHSNumber, 
	l1.RecordConnectionIdentifier, 
	l5.HospitalProviderSpellNumber,
	l8.DeliveryDate, 
	l8.NumberofBabies;	
	

Comment or raise an issue for this mapping.

Cds Gestation Length Labour Onset Observation

Source column GestationLengthLabourOnset. Converts text to integers.

GestationLengthLabourOnset GESTATION LENGTH (LABOUR ONSET) records a period of between 10 to 49 weeks in completed weeks at the onset of Labour. GESTATION LENGTH (LABOUR ONSET)

select 
	l1.NHSNumber, 
	l1.RecordConnectionIdentifier,
	l5.HospitalProviderSpellNumber,
	coalesce(max(l8.DeliveryDate), MAX(l1.CDSActivityDate)) as observation_date, 
	l8.GestationLengthLabourOnset 
from omop_staging.cds_line01 l1																			
	inner join omop_staging.cds_line08 l8														
		on l1.MessageId = l8.MessageId
	left outer join omop_staging.cds_line05 l5
		on l1.MessageId = l5.MessageId
where l8.GestationLengthLabourOnset is not null 
	and l1.NHSNumber is not null 
	and (l1.CdsRecordType = '140' or l1.CdsRecordType = '120')		
group by 
	l1.NHSNumber, 
	l1.RecordConnectionIdentifier, 
	l5.HospitalProviderSpellNumber,
	l8.DeliveryDate, 
	l8.GestationLengthLabourOnset;
	

Comment or raise an issue for this mapping.