death_date

SUS Outpatient Death

Source column death_date. Converts text to dates.

	select
		NHSNumber as nhs_number,
		coalesce(max(ReferralToTreatmentPeriodEndDate), max(CDSActivityDate)) as death_date
	from [omop_staging].[sus_OP]
	where ReferralToTreatmentPeriodStatus = 36
		and (CDSActivityDate is not null or ReferralToTreatmentPeriodEndDate is not null)
		and NHSNumber is not null
	group by NHSNumber

Comment or raise an issue for this mapping.

SUS Inpatient Death

Source column death_date. Converts text to dates.

;with primarydiagnosis as (
	select *
	from omop_staging.sus_ICDDiagnosis
	where IsPrimaryDiagnosis = 1
)

select
	apc.NHSNumber as nhs_number,
	max(apc.DischargeDateFromHospitalProviderSpell) as death_date,
	max(apc.DischargeTimeHospitalProviderSpell) as death_time,
	max(d.DiagnosisICD) as DiagnosisICD
from omop_staging.sus_APC apc
	left join primarydiagnosis d
		on apc.MessageId = d.MessageId
where
	apc.NHSNumber is not null and
	apc.DischargeDateFromHospitalProviderSpell is not null and
	apc.DischargeMethodHospitalProviderSpell = '4' -- "Patient died"

group by apc.NHSNumber

Comment or raise an issue for this mapping.

SUS A&E Death

Source column death_date. Converts text to dates.

select
	NHSNumber as nhs_number,
	coalesce(max(ReferralToTreatmentPeriodEndDate), max(CDSActivityDate)) as death_date
from [omop_staging].[sus_AE]
where ((ReferralToTreatmentPeriodStatus = 36) --PATIENT died before treatment
	or (AEPatientGroup = 70) -- PATIENT brought in dead
	or (AEAttendanceDisposal = 10))  --PATIENT died in AE
	and (CDSActivityDate is not null or ReferralToTreatmentPeriodEndDate is not null)
	and NHSNumber is not null
group by NHSNumber

Comment or raise an issue for this mapping.

Oxford GP Death

Source column DateofDeath. Converts text to dates.

  • DateofDeath Date of death.
select
	distinct
		NHSNumber,
		DateofDeath
from omop_staging.oxford_gp_demographic
where DateofDeath is not null
order by
	NHSNumber,
	DateofDeath

Comment or raise an issue for this mapping.

COSD v9 DeathDischargeDestination 

;with 
	XMLNAMESPACES('http://www.datadictionary.nhs.uk/messages/COSD-v9-0-1' AS COSD901),
	CosdRecords as ( 

	select
		T.staging.value('(Id/@root)[1]', 'uniqueidentifier') as Id,
		T.staging.query('.') as Node
	from omop_staging.cosd_staging
	cross apply content.nodes('COSD901:COSD/*') as T(staging)
	where T.staging.exist('Id/@root') = 1
		and Content.value('namespace-uri((/*:COSD)[1])','nvarchar(max)') = 'http://www.datadictionary.nhs.uk/messages/COSD-v9-0-1'
)
select
	distinct
		Node.value('(*/LinkagePatientId/NhsNumber/@extension)[1]', 'varchar(max)') as NhsNumber,
		coalesce
		(
			Node.value('(/*/Treatment/DischargeDateHospitalProviderSpell)[1]', 'varchar(max)'),
			datefromparts
			(
				year(convert(datetime, Node.value('(/*/Treatment/TreatmentStartDateCancer)[1]', 'varchar(max)'))),
				12,
				31
			)
		) as DeathDate
from CosdRecords
where Node.value('(/*/Treatment/DischargeDestinationHospitalProviderSpell/@code)[1]', 'varchar(max)') = 79 -- Not applicable - PATIENT died or stillbirth

Comment or raise an issue for this mapping.

COSD v9 BasisOfDiagnosisCancer 

;with 
	XMLNAMESPACES('http://www.datadictionary.nhs.uk/messages/COSD-v9-0-1' AS COSD901),
	CosdRecords as ( 

	select
		T.staging.value('(Id/@root)[1]', 'uniqueidentifier') as Id,
		T.staging.query('.') as Node
	from omop_staging.cosd_staging
	cross apply content.nodes('COSD901:COSD/*') as T(staging)
	where T.staging.exist('Id/@root') = 1
		and Content.value('namespace-uri((/*:COSD)[1])','nvarchar(max)') = 'http://www.datadictionary.nhs.uk/messages/COSD-v9-0-1'
), CosdDates as (
	select 
		convert(varchar(max), Node.value('(*/LinkagePatientId/NhsNumber/@extension)[1]', 'varchar(max)')) as NhsNumber,
		convert(datetime, Node.value('(/*/Treatment/TreatmentStartDateCancer)[1]', 'varchar(max)')) as TreatmentStartDateCancer,
		convert(datetime, Node.value('(/*/CancerCarePlan/MultidisciplinaryTeamDiscussionDateCancer)[1]', 'varchar(max)')) as MultidisciplinaryTeamDiscussionDateCancer,
		convert(datetime, Node.value('(/*/PrimaryPathway/Staging/StageDateFinalPretreatmentStage)[1]', 'varchar(max)')) as StageDateFinalPretreatmentStage,
		convert(datetime, Node.value('(/*/PrimaryPathway/LinkageDiagnosticDetails/DateOfPrimaryDiagnosisClinicallyAgreed)[1]', 'varchar(max)')) as DateOfPrimaryDiagnosisClinicallyAgreed
	from CosdRecords
	where Node.value('(//BasisOfDiagnosisCancer/@code)[1]', 'int') in (0, 1)
), Dates as (
	select
		NhsNumber,
		TreatmentStartDateCancer as [Date]
	from CosdDates

	union 

	select
		NhsNumber,
		MultidisciplinaryTeamDiscussionDateCancer as [Date]
	from CosdDates

	union 

	select
		NhsNumber,
		StageDateFinalPretreatmentStage as [Date]
	from CosdDates

	union 

	select
		NhsNumber,
		DateOfPrimaryDiagnosisClinicallyAgreed as [Date]
	from CosdDates
)
select
	NhsNumber,
	datefromparts(year(max ([Date])), 12, 31) as DeathDate
from Dates
group by NhsNumber

Comment or raise an issue for this mapping.

COSD v8 Death

Source column DeathDate. Converts text to dates.

  • DeathDate The date on which a PERSON died or is officially deemed to have died. PERSON DEATH DATE
;with XMLNAMESPACES('http://www.datadictionary.nhs.uk/messages/COSD-v8-1' AS COSD),
	CosdRecords as ( 
	select
		T.staging.value('(Id/@root)[1]', 'uniqueidentifier') as Id,
		T.staging.query('*[local-name() != "Id"][1]/*[1]') as Node -- Select the first inner element of the element that is not called Id.
	from omop_staging.cosd_staging
	cross apply content.nodes('COSD:COSD/*') as T(staging)
	where T.staging.exist('Id/@root') = 1
		and Content.value('namespace-uri((/*:COSD)[1])','nvarchar(max)') = 'http://www.datadictionary.nhs.uk/messages/COSD-v8-1'
		--and substring (FileName, 15, 2) = 'CO'
)
select 
	distinct
		Node.value('(//NHSNumber/@extension)[1]', 'varchar(max)') as NhsNumber,
		Node.value('(//PersonDeathDate)[1]', 'varchar(max)') as DeathDate
from CosdRecords
where Node.value('(//PersonDeathDate)[1]', 'varchar(max)') is not null;

Comment or raise an issue for this mapping.